Package: pestr 0.8.2.9000

pestr: Interface to Download Data on Pests and Hosts from 'EPPO'

Set of tools to automatize extraction of data on pests from 'EPPO Data Services' and 'EPPO Global Database' and to put them into tables with human readable format. Those function use 'EPPO database API', thus you first need to register on <https://data.eppo.int> (free of charge). Additional helpers allow to download, check and connect to 'SQLite EPPO database'.

Authors:Michal Jan Czyz [aut, cre]

pestr_0.8.2.9000.tar.gz
pestr_0.8.2.9000.zip(r-4.5)pestr_0.8.2.9000.zip(r-4.4)pestr_0.8.2.9000.zip(r-4.3)
pestr_0.8.2.9000.tgz(r-4.5-any)pestr_0.8.2.9000.tgz(r-4.4-any)pestr_0.8.2.9000.tgz(r-4.3-any)
pestr_0.8.2.9000.tar.gz(r-4.5-noble)pestr_0.8.2.9000.tar.gz(r-4.4-noble)
pestr_0.8.2.9000.tgz(r-4.4-emscripten)pestr_0.8.2.9000.tgz(r-4.3-emscripten)
pestr.pdf |pestr.html
pestr/json (API)
NEWS

# Install 'pestr' in R:
install.packages('pestr', repos = c('https://mczyzj.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mczyzj/pestr/issues

On CRAN:

5.43 score 6 stars 218 downloads 14 exports 45 dependencies

Last updated 5 months agofrom:c39481a107. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macNOTEJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winNOTEJan 28 2025
R-4.4-macNOTEJan 28 2025
R-4.3-winNOTEJan 28 2025
R-4.3-macNOTEJan 28 2025

Exports:check_eppo_tokencreate_eppo_tokeneppo_citationeppo_database_checkeppo_database_connecteppo_database_downloadeppo_names_tableseppo_table_fulleppo_tabletools_cateppo_tabletools_distrieppo_tabletools_hostseppo_tabletools_nameseppo_tabletools_pestseppo_tabletools_taxo

Dependencies:askpassbitbit64blobcachemclicliprcpp11crayoncurlDBIdplyrfansifastmapgenericsgluehmshttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrprettyunitsprogresspurrrR6readrrlangRSQLitestringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Create tables for EPPO Pest Risk Assessment

Rendered frompra_tables.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2021-09-10
Started: 2021-09-10

Example workflow of checking taxons affecting Abies alba

Rendered frompestr_example_n_of_taxon.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2021-01-23
Started: 2020-04-13

pestr Workflow

Rendered frompestr_workflow.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2021-01-23
Started: 2018-10-02

Readme and manuals

Help Manual

Help pageTopics
EPPO Data Services token variablecheck_eppo_token
EPPO Data Services token variablecreate_eppo_token
Citation helper toolseppo_citation
EPPO Data Services Database connection toolseppo_database eppo_database_check eppo_database_connect eppo_database_download
EPPO Data Services SQLite Database search toolseppo_names_tables
EPPO Data Services information tableeppo_table_full
EPPO table manipulation toolseppo_tabletools eppo_tabletools_cat eppo_tabletools_distri eppo_tabletools_hosts eppo_tabletools_names eppo_tabletools_pests eppo_tabletools_taxo