Package: pestr 0.8.4

pestr: Interface to Download Data on Pests and Hosts from 'EPPO'

Set of tools to automatize extraction of data on pests from 'EPPO Data Services' and 'EPPO Global Database' and to put them into tables with human readable format. Those function use 'EPPO database API', thus you first need to register on <https://data.eppo.int> (free of charge). Additional helpers allow to download, check and connect to 'SQLite EPPO database'.

Authors:Michal Jan Czyz [aut, cre]

pestr_0.8.4.tar.gz
pestr_0.8.4.zip(r-4.7)pestr_0.8.4.zip(r-4.6)pestr_0.8.4.zip(r-4.5)
pestr_0.8.4.tgz(r-4.6-any)pestr_0.8.4.tgz(r-4.5-any)
pestr_0.8.4.tar.gz(r-4.7-any)pestr_0.8.4.tar.gz(r-4.6-any)
pestr_0.8.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pestr/json (API)
NEWS

# Install 'pestr' in R:

install.packages('pestr', repos = c('https://mczyzj.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mczyzj/pestr/issues

On CRAN:

4.95 score 6 stars 255 downloads 14 exports 43 dependencies

Last updated from:89e592a67c. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	133
source / vignettes	OK	203
linux-release-x86_64	OK	134
macos-release-arm64	OK	158
macos-oldrel-arm64	OK	237
windows-devel	OK	95
windows-release	OK	124
windows-oldrel	OK	71
wasm-release	OK	115

Exports:check_eppo_token create_eppo_token eppo_citation eppo_database_check eppo_database_connect eppo_database_download eppo_names_tables eppo_table_full eppo_tabletools_cat eppo_tabletools_distri eppo_tabletools_hosts eppo_tabletools_names eppo_tabletools_pests eppo_tabletools_taxo

Dependencies:askpass bit bit64 blob cachem cli clipr cpp11 crayon curl DBI dplyr fastmap generics glue hms httr jsonlite lifecycle magrittr memoise mime openssl pillar pkgconfig prettyunits progress purrr R6 readr rlang RSQLite stringi stringr sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr

Create tables for EPPO Pest Risk Assessment

Rendered frompra_tables.Rmdusingknitr::rmarkdownon May 20 2026.

Last update: 2021-09-10
Started: 2021-09-10

Example workflow of checking taxons affecting Abies alba

Rendered frompestr_example_n_of_taxon.Rmdusingknitr::rmarkdownon May 20 2026.

Last update: 2021-01-23
Started: 2020-04-13

pestr Workflow

Michal Jan Czyz

Rendered frompestr_workflow.Rmdusingknitr::rmarkdownon May 20 2026.

Last update: 2021-01-23
Started: 2018-10-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
EPPO Data Services token variable	check_eppo_token
EPPO Data Services token variable	create_eppo_token
Citation helper tools	eppo_citation
EPPO Data Services Database connection tools	eppo_database eppo_database_check eppo_database_connect eppo_database_download
EPPO Data Services SQLite Database search tools	eppo_names_tables
EPPO Data Services information table	eppo_table_full
EPPO table manipulation tools	eppo_tabletools eppo_tabletools_cat eppo_tabletools_distri eppo_tabletools_hosts eppo_tabletools_names eppo_tabletools_pests eppo_tabletools_taxo